Package index
-
analysis_search()
- Retrieve Analyses from UNIFI API
-
arcMS
arcMS-package
- UNIFI MS converter to Parquet and HDF5 formats
-
collect_one_sample_data()
- Collect data from one sample
-
connection_apihosturl(<connection_params>)
connection_token(<connection_params>)
- Class containing UNIFI API connection parameters
-
convert_all_samples_data()
- Convert data from all samples in an Analysis
-
convert_bin_to_ccs()
- Convert bin value to CCS (Collision Cross Section) value
-
convert_one_sample_data()
- Convert one sample
-
create_connection_params()
- Create connection parameters
-
create_sample_dataset()
- Create a sample dataset from a Parquet file created by arcMS
-
folders_search()
- Retrieve Folders from UNIFI API
-
get_connection_params()
- Retrieve the connection parameters object
-
get_sample_infos()
- Retrieve Sample Information from UNIFI API with a sample id
-
get_samples_list()
- Retrieve the list of Samples Results from an Analysis in UNIFI API
-
get_unifi_api_token()
- Retrieve the API token in the environment variable
-
run_app()
- Run Shiny application to use the conversion package
-
get_sample_data(<sample_dataset>)
- Class containing a sample data and metadata
-
get_sample_metadata(<sample_infos>)
get_sample_name(<sample_infos>)
get_sample_id(<sample_infos>)
get_analysis_name(<sample_infos>)
get_sample_metadata_json(<sample_infos>)
get_spectrum_metadata(<sample_infos>)
get_spectrum_metadata_json(<sample_infos>)
add_sample_id(<sample_infos>)
- Class containing a sample's information
-
save_one_sample_data()
- Save collected data from one sample
-
store_unifi_api_token()
- Save the API token in the
.Renviron
file for repeated use